The research presented here was partly supported by the National Science Foundation grants DMS-0203762, DMS-0422400, DMS-0503981, ATM-0620550, and DMS-0806175.

Publications

  • Leman, S. C., Chen, Y., and Lavine, M. (2009). The Multiset Sampler . Journal of the American Statistical Association . 104, 1029-1041.
  • Butala, M. D., Frazin, R. A., Chen, Y., and Kamalabadi, F. (2009). Tomographic Imaging of Dynamic Objects With the Ensemble Kalman Filter. IEEE Transactions on Image Processing, 18, 1573-1587.
  • Chen, Y., Dinwoodie, I. H., and Yoshida, R. (2009). Markov Chains, Quotient Ideals, and Connectivity with Positive Margins. In Algebraic and Geometric Methods in Statistics, 99-110. Cambridge University Press.
  • Wang, D., Chen, Y., and Cai, X. (2009). State and Parameter Estimation of Hydrologic Models Using the Constrained Ensemble Kalman Filter. Water Resources Research, 45, W11416, doi:10.1029/2008WR007401.
  • Xie, H., Eheart, J.W., Chen, Y., and Bailey, B.A. (2009). An Approach for Improving the Sampling Efficiency in the Bayesian Calibration of Computationally Expensive Simulation Models. Water Resources Research, 45, W06419, doi:10.1029/2007WR006773.
  • Li, S., Hartman, G. L., and Chen, Y. (2009). Evaluation of Aggressiveness of Fusarium Virguliforme Isolates That Cause Soybean Sudden Death Syndrome. Journal of Plant Pathology, 91, 77-86.
  • Chen, Y., Lai, T. L., and Wu, B. (2009). Fast Particle Filters and Their Applications to Adaptive Control in Change-Point ARX Models and Robotics. In Frontiers in Adaptive Control, 51-70. In-Tech, Vienna, Austria.
  • Chen, Y. (2009). Sequential Importance Sampling with Resampling in Molecular Population Genetics. In Frontiers of Biostatistics and Bioinformatics, 16-39. University of Science and Technology of China Press.
  • Butala, M. D., Kamalabadi, F., Frazin, R. A., and Chen, Y. (2008). Dynamic Tomographic Imaging of the Solar Corona. IEEE Journal of Selected Topics in Signal Processing, 2, 755-766.
  • Butala, M. D., Yun, J., Chen, Y., Frazin, R. A., and Kamalabadi, F. (2008). Asymptotic Convergence of the Ensemble Kalman Filter. Proceedings of the 2008 IEEE International Conference on Image Processing, 825-828.
  • Xie, J., Yang, J., Chen, Y., Wang, H., and Yu. P. S. (2008). A Sampling-Based Approach to Information Recovery. Proceedings of the 24th International Conference on Data Engineering, 476-485.
  • Chen, Y., Dinwoodie, I. H., and MacGibbon, B. (2007). Sampling for Conditional Inference on Case-Control Data. Biometrics, 63, 845-855.
  • Leman, S. C., Uyenoyama, M. K., Lavine, M., and Chen, Y. (2007). The Evolutionary Forest Algorithm. Bioinformatics, 23, 1962-1968.
  • Wu, T, Chen, Y., and Han, J. (2007). Association Mining in Large Databases: A Re-Examination of Its Measures. Proceedings of the 11th European Conference on Principles and Practice of Knowledge Discovery in Databases, 621-628.
  • Chen, Y. and Liu, J. S. (2007). Sequential Monte Carlo Methods for Permutation Tests on Truncated Data. Statistica Sinica, 17, 857-872.
  • Chen, Y. (2007). Conditional Inference on Tables with Structural Zeros. Journal of Computational and Graphical Statistics, 16, 445-467. Software associated with this paper.
  • Butala, M. D., Frazin, R. A., Chen, Y., and Kamalabadi, F. (2007). A Monte Carlo Technique for Large-Scale Dynamic Tomography. Proceedings of the 2007 IEEE International Conference on Acoustics, Speech, and Signal Processing, Vol. 3, III-1217-III-1220.
  • Chen, Y. and Lai, T. L. (2007). Identification and Adaptive Control of Change-Point ARX Models via Rao-Blackwellized Particle Filters. IEEE Transactions on Automatic Control, 52, 67-72
  • Chen, Y., Lin, C. H., and Sabatti, C. (2006). Volume Measures for Linkage Disequilibrium. BMC Genetics, 7:54. Software associated with this paper.
  • Wang, H., Lin, C. H., Service, S., Chen, Y., Freimer, N., Sabatti, C., and The international collaborative group on isolated populations (2006). Linkage Disequilibrium and Haplotype Homozygosity in Population Samples Genotyped at a High Marker Density. Human Heredity, 62, 175-189.
  • Chen, Y. (2006). Simple Existence Conditions for Zero-One Matrices with at Most One Structural Zero in Each Row and Column. Discrete Mathematics, 306, 2870-2877.
  • Chen, Y., Dinwoodie, I. H., and Sullivant, S. (2006). Sequential Importance Sampling for Multiway Tables. The Annals of Statistics , 34, 523-545.
  • Huber, M., Chen, Y., Dinwoodie, I., Dobra, A. and Nicholas, M. (2006). Monte Carlo Algorithms for Hardy-Weinberg Proportions. Biometrics, 62, 49-53.
  • Leman, S. C., Chen, Y., Stajich, J. E., Noor, M. A. F., and Uyenoyama, M. K. (2005). Likelihoods from Summary Statistics: Recent Divergence Between Species. Genetics, 171, 1419-1436.
  • Chen, Y. and Small, D. (2005). Exact Tests for the Rasch Model via Sequential Importance Sampling. Psychometrika, 70, 11-30.
  • Chen, Y. (2005). Another Look at Rejection Sampling Through Importance Sampling. Statistics and Probability Letters, 72, 277-283.
  • Chen, Y., Diaconis, P., Holmes, S. and Liu, J.S. (2005). Sequential Monte Carlo Methods for Statistical Analysis of Tables. Journal of the American Statistical Association, 100, 109-120.
  • Chen, Y., Xie, J., and Liu, J.S. (2005). Stopping-Time Resampling for Sequential Monte Carlo Methods. Journal of the Royal Statistical Society, Series B, 67, 199-217.
  • Chen, Y., Dinwoodie, I., Dobra, A. and Huber, M. (2005). Lattice Points, Contingency Tables, and Sampling. In Contemporary Mathematics, Vol. 374, 65-78. American Mathematical Society.
  • Xie, J., Yang, J. and Chen, Y. (2005). On Joining and Caching Stochastic Streams. Proceedings of the 2005 ACM SIGMOD International Conference on Management of Data, 359-370.
  • Yi, K., Yu, H., Yang, J., Xia, G. and Chen, Y. (2003). Efficient Maintenance of Materialized Top-k Views. Proceedings of the 19th International Conference on Data Engineering, 189-200.
  • Chen, Y. and Liu, J.S. (2000). Discussion on ``Inference in Molecular Population Genetics'' by M. Stephens and P. Donnelly. Journal of the Royal Statistical Society, Series B, 62, 644-645.